Pacbio whole genome shotgun sequencing of genomic DNA library 'LR_117... - SRA

SRX228389: Pacbio whole genome shotgun sequencing of genomic DNA library 'LR_117_Ececorum_1.00nM' containing sample 'ATCC43198' from individual 'Enterococcus_cecorum_ATCC43198'
4 PACBIO_SMRT (PacBio RS) runs: 326,964 spots, 364.3M bases, 1.5Gb downloads

UUID: e67e8b02-73f5-45af-87c0-9332b7af5680

Design: Pacbio sequencing of Enterococcus cecorum DSM 20682 = ATCC 43198 via random selection

Submitted by: Broad Institute (BI)

Study: Enterococcus cecorum DSM 20682 = ATCC 43198 Genome sequencing and assembly

PRJNA82533 • SRP022779 • All experiments • All runs

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Genome Sequencing of Enterococcus

Sample: Generic sample from Enterococcus cecorum DSM 20682 = ATCC 43198

SAMN00779860 • SRS411282 • All experiments • All runs

Organism: Enterococcus cecorum DSM 20682 = ATCC 43198

Library:

Name: LR_117_Ececorum_1.00nM

Instrument: PacBio RS

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Spot descriptor:

1 forward

Experiment attributes: (show all 15 attributes...) (hide...)

gssr_id: 126937.0

lsid: broadinstitute.org:bsp.prod.sample:2898H

material_type: DNA:DNA Somatic

pacbio_rs_binding_kit: DNA/Polymerase Binding Kit 1.0 (24 rxn)

pacbio_rs_binding_kit_barcode: 110125001359802061511

pacbio_rs_template_prep_kit: DNA Template Prep Kit 1.0 (10 ug)

pacbio_rs_template_prep_kit_barcode: 110128001322716102811

project: D825

root_sample_id: SM-221WX

sample_id: SM-2898H

sequencing_protocol: Standard Sequencing

template_preparation_adaptor_sequence: ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT

template_preparation_kit_insert_size: 2700

used_binding_kit_control: true

work_request: 26573

Pipeline: show...hide...

Name	Step	Program	Version
2011-09-15 20:42:39.0	Instrument Control Version	1.2.1.0.87716
base caller	2011-09-15 23:05:32.0	Primary Analysis	NRT@172.31.128.10:8082, SwVer=1210.87716, HwVer=1.0

Runs: 4 runs, 326,964 spots, 364.3M bases, 1.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR684489	81,741	112.4M	455.8Mb	2013-02-07
SRR707860	81,741	101.1M	410.1Mb	2013-02-12
SRR711703	81,741	81.1M	334.2Mb	2013-02-13
SRR713947	81,741	69.7M	287.7Mb	2013-02-13

ID:: 317134

SRA

Sequence Read Archive

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